Titulo:
Orígenes físicos del citoplasma y la emergencia del código genético
.
Guardado en:
2805-7821
3
2023-07-31
Facultad de Ciencias Básicas - 2024
info:eu-repo/semantics/openAccess
http://purl.org/coar/access_right/c_abf2
id |
oai:revistas.unicordoba.edu.co:article_3352 |
---|---|
record_format |
ojs |
spelling |
Orígenes físicos del citoplasma y la emergencia del código genético Díaz Delgadillo, Andrés Felipe Evolución Autorreplicación Pre-biótico Polímeros Auto-ensamblaje Evolution Self-replication Pre-biotic Polymers Self-assembly 3 1 Artículo de revista Journal article 2023-07-31T00:00:00Z 2023-07-31T00:00:00Z 2023-07-31 application/pdf Universidad de Córdoba Facultad de Ciencias Básicas 2805-7821 https://revistas.unicordoba.edu.co/index.php/rfcb/article/view/3352 10.21897/rfcb.v3i1.3352 https://doi.org/10.21897/rfcb.v3i1.3352 https://creativecommons.org/licenses/by-nc-sa/4.0/ Facultad de Ciencias Básicas - 2024 Aran, M., Ferrer-Sueta, G., & Radi, R. (2011). ATP and Mg2+ promote the reversible oligomerization and aggregation of chloroplast 2-Cys periredoxin. The Journal of Biological Chemistry, 286(26), 23441-23451. doi: 10.1074/jbc.M111.224964 Abbas, M., & Kakkar, V. (2021). Peptide-based coacervates as biomimetic protocells. Chemical Society Reviews, 50(7), 3690-3705. doi: 10.1039/d0cs00307g Arsene, S., Delcea, M., & Kelemen, L. (2018). Coupled catabolism and anabolism in autocatalytic RNA sets. Nucleic Acids Research, 46(18), 9384-9393. https://doi.org/10.1093/nar/gky699 Arai, Y., Nomura, T., Sakuma, S., Nagai, T., & Urano, Y. (2018). RGB-color intensiometric indicators visualize spatiotemporal dynamics of ATP in single cells. Angewandte Chemie International Edition in English, 57(34), 10873-10878. https://doi.org/10.1002/anie.201804304 Baev, A. Y., Cheryasov, G. V., & Skulachev, V. P. (2020). Inorganic polyphosphate is produced and hydrolyzed in F0F1-ATP synthase of mammalian mitochondria. Biochemical Journal, 477(8), 1515-1524. doi: 10.1042/BCJ20200141 Brangwynne, C. P., Eckmann, C. R., Courson, D. S., Rybarska, A., Hoege, C., Gharakhani, J., … Hyman, A. A. (2011). Active liquid-like behavior of nucleoli determines their size and shape in Xenopus laevis oocytes. Proceedings of the National Academy of Sciences of the United States of America, 108(11), 4334-4339. https://doi.org/10.1073/pnas.1017150108 Bose, T., Lee, K. H., Lu, S., Xu, J., & Zhang, Y. (2022). Liquid-to-solid phase transition of oskar ribonucleoprotein granules is essential for their function in Drosophila embryonic development. Cell, 185(8), 1308-1324. https://doi.org/10.1016/j.cell.2022.02.022 Chandrasekhar, R., Melin, J., & Lindgren, A. (2019). A molecular sensor reveals differences in macromolecular crowding between the cytoplasms and nucleoplasm. ACS Sensors, 4(8), 1835-1843. https://doi.org/10.1021/acssensors.9b00569 Chen, H., Zheng, X., Zheng, Y., & Anderson, D. H. (2019). Nucleoplasmin is a Limiting Component in the Scaling of Nuclear Size with Cytoplasmic Volume. Journal of Cell Biology, 218(12), 4063-4078. https://doi.org/10.1083/jcb.201908059 Diaz-Delgadillo, A. F. (2016). Temperature drives P granule formation in C. elegans. Editorial: Sächsiches Library TUDresden. Diaz-Delgadillo, A. F. (2021). Local thermodynamics govern formation and dissolution of Caenorhabditis elegans P granule condensates. Proceedings of the National Academy of Sciences of the United States of America, 118(37), e2102772118. https://doi.org/10.1073/pnas.2102772118 Duan, X., Li, Y., & Pang, X. (2019). Protocell: A new strategy for drug delivery. Current Pharmaceutical Design, 25(29), 3099–3106. Eigen, M., McCaskill, J., & Schuster, P. (1988). Molecular quasi-species. The Journal of Physical Chemistry, 92(24), 6881-6891. https://doi.org/10.1021/j100335a010 Flory, P. J. (1985). Thermodynamics of high polymer solutions. The Journal of Chemical Physics, 83(3), 1564-1570. doi: 10.1063/1.449343 Fraccia, T. P., Iacovella, C. R., & Abbott, N. L. (2020). Liquid crystal coacervates composed of short double-stranded DNA and cationic peptides. ACS Nano, 14(11), 15071-15082. doi: 10.1021/acsnano.0c06746 Ferris, J. P., Hill, A. R., Jr., & Liu, R. (1996). Synthesis of long prebiotic oligomers on mineral surfaces. Nature, 381(6577), 59-61. doi: 10.1038/381059a0 Fu, K., Wu, H., & Su, Z. (2021). Self-assembling peptide-based hydrogels: Fabrication, properties, and applications. Biotechnology Advances, 49, 107752. https://doi.org/10.1016/j.biotechadv.2021.107752 Gaspers, L. D., Bakowski, D., & Nadolski, M. J. (2017). Spatial Ca2+ Profiling: Decrypting the Universal Cytosolic Ca2+ Oscillation. Journal of Physiology, 595(10), 3053-3062. https://doi.org/10.1113/jp273212 Gray, M. J., Wholey, W. Y., & Jakob, U. (2014). Polyphosphate is a primordial chaperone. Molecular Cell, 53(5), 689-699. doi: 10.1016/j.molcel.2014.01.025 Gil, R. R., & Bruchez, M. P. (2015). Stability of energy metabolites - An often overlooked issue in metabolomics studies: A review. Electrophoresis, 36(17), 2156-2169. doi: 10.1002/elps.201400585 Geiger, F. C., Kjær, J., & Andersen, K. R. (2021). Liquid-liquid phase separation underpins the formation of replication factories in rotaviruses. The EMBO Journal, 40(18), e107711. https://doi.org/10.15252/embj.2020107711 Green, N. J., & Maréchal, A. (2021). Illuminating life's origins: UV photochemistry in abiotic synthesis of biomolecules. Journal of the American Chemical Society, 143(18), 7219-7236. doi: 10.1021/jacs.0c13200 Hudson, J. L., Field, R. J., & Noyes, R. M. (1981). Chaos in Belousov-Zhabotinsky reaction. The Journal of Chemical Physics, 74, 6171. doi: 10.1063/1.441007 Hyman, A. A., Weber, C. A., & Jülicher, F. (2011). Beyond stereospecificity: Liquids and mesoscale organization of cytoplasm. Developmental Cell, 21(1), 14-16. https://doi.org/10.1016/j.devcel.2011.06.013 Hyman, A. A., Weber, C. A., & Jülicher, F. (2014). Liquid-liquid phase separation in biology. Annual Review of Cell and Developmental Biology, 30, 39-58. https://doi.org/10.1146/annurev-cellbio-100913-013325 Ianeselli, L., Dose, B., & Maurel, M. C. (2019). Periodic melting of oligonucleotides by oscillating salt concentrations triggered by microscale water cycles inside heated rock pores. Angewandte Chemie International Edition, 58(38), 13289-13294. https://doi.org/10.1002/anie.201905005 Kostic, D. A., Lynch, K. M., & Schubert, C. J. (2020). The second law and entropy misconceptions demystified. Entropy, 22, 648. doi: 10.3390/e22060648 Kim, J. T., & Terman, G. (2006). Multi-scale computational model of fuel homeostasis during exercise: Effect of hormonal control. Annals of Biomedical Engineering, 35(1), 1-11. doi: 10.1007/s10439-006-9219-1 Keil, P., Spasic, I., Utz, M., & Winterhalter, M. (2017). Proton gradients and pH oscillations emerge from heat flow at the microscale. Nature Communications, 8, 1-11. https://doi.org/10.1038/s41467-017-02065-3 Keil, P., Spasic, I., Utz, M., & Winterhalter, M. (2016). Probing of molecular replication and accumulation in shallow heat gradients through numerical simulations. Physical Chemistry Chemical Physics, 18(30), 20153-20166. https://doi.org/10.1039/c6cp00577b Lukacs, G. L., Haggie, P., Seksek, O., Lechardeur, D., Freedman, N., & Verkman, A. S. (2000). Size-dependent DNA Mobility in Cytoplasm and Nucleus. Journal of Biological Chemistry, 275(3), 1625-1629. https://doi.org/10.1074/jbc.275.3.1625 Martin, W. F., Garg, S., & Zimorski, V. (2010). Evolutionary Origins of Metabolic Compartmentalization in Eukaryotes. Philosophical Transactions of the Royal Society B: Biological Sciences, 365(1541), 847-855. https://doi.org/10.1098/rstb.2009.0252 Mariani, A., Munn, A. S., & Swain, P. M. (2018). pH-driven RNA strand separation under prebiotically plausible conditions. ACS Biochemistry, 57(43), 1308-1315. https://doi.org/10.1021/acs.biochem.8b01080 Martynov, V. G., & Vorob'eva, O. V. (2014). Dry polymerization of 3',5'-cyclic GMP to long strands of RNA. ChemBioChem, 15(6), 879-889. doi: 10.1002/cbic.201300773 Mansy, S. S., Schrum, J. P., & Krishnamurthy, M. (2015). Heat flux across an open pore enables the continuous replication and selection of oligonucleotides towards increasing length. Nature Chemistry, 7(4), 315-321. doi: 10.1038/nchem.2202 Ma, G. (2014). Microencapsulation of protein drugs for drug delivery: Strategy, preparation, and applications. Journal of Controlled Release, 193, 324–340. https://doi.org/10.1016/j.jconrel.2014.09.003 Needleman, D., Dogic, Z., & Fraden, S. (2017). Active Matter at the Interface Between Materials Science and Cell Biology. Advanced Materials Interfaces, 4(17), 170048. https://doi.org/10.1002/admi.201700048 Odermatt, P. D., Shrestha, R. L., & Rüdiger, M. (2021). Variations of Intracellular Density During the Cell Cycle Arise from Tip-growth Regulation in Fission Yeast. eLife, 10, e64901. https://doi.org/10.7554/eLife.6490 Oró, J. (1960). Synthesis of adenine from ammonium cyanide. Biochemical and Biophysical Research Communications, 2(6), 407-412. doi: 10.1016/0006-291X(60)90270-4 Oparin, A. I. (1924). The origin of life. In E. D. Fröhlich (Ed.), The origin of life on earth (pp. 71-88). New York: Macmillan. Patel, A. J., Varner, J. D., & Flagel, L. E. (2017). ATP as a biological hydrotrope. Science, 356(6334), 753-756. doi: 10.1126/science.aaf6846 Perazzo, A., Preziosi, V., & Guido, S. (2015). Phase inversion emulsification: Current understanding and applications. Advances in Colloid and Interface Science, 222, 581–599. https://doi.org/10.1016/j.cis.2015.01.001 Pardi, N., Hogan, M. J., Porter, F. W., & Weissman, D. (2018). mRNA vaccines — a new era in vaccinology. Nature Reviews Drug Discovery, 17(4), 261–279. https://doi.org/10.1038/nrd.2017.243 Reinke, A., Chen, J. C., Aronova, S., Powers, T., & Cui, Y. (2006). Genomewide Oscillation of Transcription in Yeast. Trends in Biochemical Sciences, 31(4), 166-173. https://doi.org/10.1016/j.tibs.2006.01.006 Rasmus, F. W. (2000). Darwin on variation and heredity. Journal of the History of Biology, 33(3), 425-455. doi: 10.1023/A:1004760716015 Ritson, D. J., Sutherland, J. D., & Sutherland, J. D. (2013). Prebiotic synthesis of simple sugars by photoredox systems chemistry. Nature Chemistry, 4(11), 895-899. doi: 10.1038/nchem.1476 Rai, R., Alwani, S., & Badea, I. (2019). Polymeric nanoparticles in gene therapy: New avenues of design and optimization for delivery applications. Polymers, 11(4), 745. https://doi.org/10.3390/polym11040745 Saric, A., Sitte, E., & Krause, E. (2021). Solutes as controllers of endomembrane dynamics. Nature Reviews, 22, April 2021. doi: 10.1038/s41579-020-00519-3 Scharf, C., Virgo, N., Cleaves II, H. J., Aono, M., Aubert-Kato, N., Aydinoglu, A., … Yarus, M. (2016). Quantifying the origins of life on a planetary scale. Proceedings of the National Academy of Sciences of the United States of America, 113(29), 8127-8132. https://doi.org/10.1073/pnas.1523233113 Schulman, R., Winfree, E., & Seeman, N. C. (2012). Robust self-replication of combinatorial information via crystal growth and scission. Proceedings of the National Academy of Sciences, 109(17), 6405-6410. doi: 10.1073/pnas.1119770109 Seal, M., Weil-Ktorza, O., Despotović, D., Tawfik, D. S., Levy, Y., Metanis, N., Longo, L. M., & Goldfarb, D. (2022). Peptide-RNA coacervates as a cradle for the evolution of folded domains. Journal of the American Chemical Society, 144(31), 14150-14160. doi: 10.1021/jacs.2c03819 Srimungkala, S., Noguchi, K., & Yoshida, Z. (1999). Bromination reactions important in the mechanism of the Belousov-Zhabotinsky system. The Journal of Physical Chemistry A, 103(7), 1038-1043. https://doi.org/10.1021/jp984201o Schuster, P. (1984). Polynucleotide evolution, hypercycles, and the origin of the genetic code. Advances in Space Research, 4(12), 143-151. Szathmáry, E. (2013). On the propagation of a conceptual error concerning hypercycles and cooperation. Journal of Systems Chemistry, 4(1), 1-6. https://doi.org/10.1186/1759-2208-4-1 Tsien, R. Y., Pozzan, T., & Rink, T. J. (1982). Calcium Homeostasis in Intact Lymphocytes: Cytoplasmic Free Calcium Monitored With a New, Intracellularly Trapped Fluorescent Indicator. The Journal of Cell Biology, 94(2), 325-334. Uchida, S., & Kataoka, K. (2019). Design concepts of polyplex micelles for in vivo therapeutic delivery of plasmid DNA and messenger RNA. Journal of Biomedical Materials Research Part A, 107(5), 978-990. https://doi.org/10.1002/jbm.a.36614 Wikstrom, M., Hummer, G., & Kaila, V. R. I. (2020). Thermodynamic efficiency, reversibility, and degree of coupling in energy conservation by the mitochondrial respiratory chain. Communications Biology, 3(1), 1-12. doi: 10.1038/s42003-020-01260-7 Walter, H., Brooks III, D. E., & Fisher, E. F. (1995). Phase separation in cytoplasm due to macromolecular crowding, is the basis for microcompartmentalization. FEBS Letters, 361(2-3), 135-139. https://doi.org/10.1016/0014-5793(95)00173-3 Wang, X., Yang, L., Chen, Z., & Wang, Z. (2019). Sol–gel immobilized biomolecules: advantages, recent developments, applications and future perspectives. Journal of Materials Chemistry B, 7(45), 7021-7031. doi: 10.1039/C9TB01772B Yang, L., Wang, X., & Li, Y. (2006). Crystal shape control manipulating supersaturation cooling crystalization. Crystal Growth & Design, 6(12), 2907-2915. doi: 10.1021/cg060363c Zhang, S., Holmes, T., Lockshin, C., & Rich, A. (2005). Supramolecular assembly of extracellular matrix glycoproteins for synthetic biomaterials. Biomaterials, 26(30), 7586-7594. DOI: 10.1016/j.biomaterials.2005.05.049. Zellmer, G. F., Schmidt, M. W., & Arculus, R. J. (2015). Volatiles in subduction zone magmatism. Evolution and Eruption of Arc Magmas. Geological Society of London. Special Publications, 410, 1-17. doi: 10.1144/SP410.7 https://revistas.unicordoba.edu.co/index.php/rfcb/article/download/3352/5452 info:eu-repo/semantics/article http://purl.org/coar/resource_type/c_6501 info:eu-repo/semantics/publishedVersion http://purl.org/coar/version/c_970fb48d4fbd8a85 info:eu-repo/semantics/openAccess http://purl.org/coar/access_right/c_abf2 Text Publication |
institution |
UNIVERSIDAD DE CORDOBA |
thumbnail |
https://nuevo.metarevistas.org/UNIVERSIDADDECORDOBA/logo.png |
country_str |
Colombia |
collection |
Facultad de Ciencias Básicas |
title |
Orígenes físicos del citoplasma y la emergencia del código genético |
spellingShingle |
Orígenes físicos del citoplasma y la emergencia del código genético Díaz Delgadillo, Andrés Felipe Evolución Autorreplicación Pre-biótico Polímeros Auto-ensamblaje Evolution Self-replication Pre-biotic Polymers Self-assembly |
title_short |
Orígenes físicos del citoplasma y la emergencia del código genético |
title_full |
Orígenes físicos del citoplasma y la emergencia del código genético |
title_fullStr |
Orígenes físicos del citoplasma y la emergencia del código genético |
title_full_unstemmed |
Orígenes físicos del citoplasma y la emergencia del código genético |
title_sort |
orígenes físicos del citoplasma y la emergencia del código genético |
author |
Díaz Delgadillo, Andrés Felipe |
author_facet |
Díaz Delgadillo, Andrés Felipe |
topic |
Evolución Autorreplicación Pre-biótico Polímeros Auto-ensamblaje Evolution Self-replication Pre-biotic Polymers Self-assembly |
topic_facet |
Evolución Autorreplicación Pre-biótico Polímeros Auto-ensamblaje Evolution Self-replication Pre-biotic Polymers Self-assembly |
citationvolume |
3 |
citationissue |
1 |
publisher |
Universidad de Córdoba |
ispartofjournal |
Facultad de Ciencias Básicas |
source |
https://revistas.unicordoba.edu.co/index.php/rfcb/article/view/3352 |
language |
|
format |
Article |
rights |
https://creativecommons.org/licenses/by-nc-sa/4.0/ Facultad de Ciencias Básicas - 2024 info:eu-repo/semantics/openAccess http://purl.org/coar/access_right/c_abf2 |
type_driver |
info:eu-repo/semantics/article |
type_coar |
http://purl.org/coar/resource_type/c_6501 |
type_version |
info:eu-repo/semantics/publishedVersion |
type_coarversion |
http://purl.org/coar/version/c_970fb48d4fbd8a85 |
type_content |
Text |
publishDate |
2023-07-31 |
date_accessioned |
2023-07-31T00:00:00Z |
date_available |
2023-07-31T00:00:00Z |
url |
https://revistas.unicordoba.edu.co/index.php/rfcb/article/view/3352 |
url_doi |
https://doi.org/10.21897/rfcb.v3i1.3352 |
eissn |
2805-7821 |
doi |
10.21897/rfcb.v3i1.3352 |
url2_str_mv |
https://revistas.unicordoba.edu.co/index.php/rfcb/article/download/3352/5452 |
_version_ |
1811199776593543168 |